Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs79939457 chr16:3697221 T/A 9.84E-12 170 22.57 22.63 2.3 KM Plot
UCEC rs80115964 chr3:47968070 G/A 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs80179488 chr14:73589497 C/T 4.68E-7 173 22.57 22.63 10.33 KM Plot
UCEC rs8025163 chr15:67753692 C/T 1.54E-5 174 22.75 18.6 18.47 KM Plot
UCEC rs80252681 chr14:105055897 G/A 0 166 22.57 22.78 1.67 KM Plot
UCEC rs80263403 chr16:3696943 A/G 9.84E-12 170 22.57 22.63 2.3 KM Plot
UCEC rs80265597 chr14:73352550 T/C 5.77E-7 172 22.8 21.27 10.33 KM Plot
UCEC rs8046609 chr16:30833272 A/G 8.85E-9 172 4.5 18.03 22.8 KM Plot
UCEC rs8047857 chr16:82165577 A/C 3.01E-7 174 21.9 22.85 3.82 KM Plot
UCEC rs8068049 chr17:30183857 T/C 6.81E-6 174 15.77 20.93 22.63 KM Plot
UCEC rs8192914 chr5:54402970 G/A 1.54E-7 173 21.1 27.78 20.33 KM Plot
UCEC rs870825 chr4:185588045 A/G 1.23E-8 174 20.87 29.93 13.1 KM Plot
UCEC rs890054 chr2:1700986 C/T 4.77E-6 174 6.28 22.57 22.63 KM Plot
UCEC rs906194 chr15:84750638 T/C 6.18E-11 172 7.95 27.43 22.6 KM Plot
UCEC rs9293747 chr5:77705567 A/G 2.94E-5 174 18.37 25.87 21.3 KM Plot